docs(agents): one workspace per agent run — the shared checkout is off-limits
gate / gate (pull_request) Failing after 1m48s
gate / conformance (pull_request) Has been skipped

Agents have been working in the operator's checkout and clobbering each other.
Nothing in the tree told them not to: worktrees appeared in CLAUDE.md only as
§3's gate workarounds, and decisions/README.md described worktree isolation as
something agents already do rather than as a rule.

New CLAUDE.md §0 states the rule, with the commands and an explicit do-not list
for the shared checkout. Placed before §1 so every existing §-reference in the
repo keeps its meaning.

Measured in the shared checkout on 2026-10-05, each row a distinct failure mode:
107 `checkout: moving` reflog entries; sitting on feat/pm-agent-issue-to-pr, not
main; two other runs' untracked trees left in it; local main two commits behind
origin/main; 42 registered worktrees of which 31 are on already-merged branches;
9 gate scripts carrying a `.claude/` exclusion because an in-tree worktree made
find-based discovery count the same manifest up to 18 times.

Corrects a claim carried in earlier briefs: `git worktree remove` is NOT blocked
by the agent sandbox. Provoked on a throwaway worktree — rc 0.

§3 reframed as the normal path and grown from two breakages to three:
spec-immutability's skip is avoidable, not merely tolerated, with the spec repo
mounted read-only in the same ENGINE shim plus -e SPEC_REPO=/home-network-k3s.

CLAUDE.md is a sensitive path, so this PR needs a non-author review or an
administrator /approve-override posted as a PR review. Not posted by me: §1
forbids an agent clearing that on its own PR.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
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jakman85andClaude Opus 5 committed 2026-10-05 22:23:50 -05:00
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---
date: 2026-10-05
branch: docs/agents-work-in-their-own-workspace
title: One workspace per agent run — the shared checkout is now documented as off-limits
---
## What changed
Agents have been doing their work in the operator's checkout at
`/var/home/keith/source/home-network-k3s-impl` and clobbering each other. Nothing in the tree
told them not to: worktrees appeared in CLAUDE.md only as §3's *gate workarounds*, i.e. as an
awkward edge case, and `decisions/README.md` asserted worktree isolation as a fact about how
agents already behave rather than as a rule they must follow. Nowhere was the rule stated.
Documentation only — no code, no manifests, no pipeline logic.
- **`CLAUDE.md`: new `## 0. Work in your OWN workspace. Never in the shared checkout.`**
Placed before §1 so the section numbers every other file and handoff entry cites (§1, §2b,
§3, §7) all keep their meaning. It gives the three commands (`git fetch origin main`;
`git worktree add -b <type>/<slug> <path outside the repo> origin/main`; `cd`), an explicit
do-not list for the shared checkout (no `checkout`/`switch`, no edits, no
`add`/`commit`/`stash`/`restore`, no removing others' worktrees), a measurement table, the
"put it outside the repo root" rule, cleanup, what to do if you are already standing in the
shared checkout with edits, and what a PM must put in a brief it writes for another agent.
- **`CLAUDE.md` intro** now says "Start with §0", with the reason: it is the rule you can
break before you have read anything else.
- **`CLAUDE.md` §3** retitled "Running the gate from a worktree" and reframed as the normal
path rather than an edge case, since §0 now makes every gate run a worktree run. Its list
grew from two breakages to three: `spec-immutability`'s skip is *avoidable*, not merely
tolerated, if the `ENGINE` shim also mounts the sibling spec repo read-only and passes
`-e SPEC_REPO=/home-network-k3s`.
- **`CLAUDE.md` §4** gained "One branch, one workspace, one PR".
- **`README.md`**: a fourth non-negotiable rule ("No work in a shared checkout"), and
"Working on this repo" now opens with how to get out of the checkout before describing the
dev container that runs in it.
- **`decisions/README.md`**: the worktree-isolation sentence now cites §0 as the requirement
instead of describing it as something agents happen to do.
I did this work the way the new §0 requires — a worktree at
`<session scratchpad>/wt-workspace-rule`, outside the repo root, branched from `origin/main`,
with the shared checkout left on the branch and with the untracked files I found in it.
## What I verified
Every number in the new §0 table was measured in the shared checkout on 2026-10-05, not
recalled:
| Claim | Command | Value |
|---|---|---|
| shared HEAD is yanked between branches | `git reflog \| grep -c 'checkout: moving'` | **107** |
| it is not sitting on `main` | `git worktree list` | `feat/pm-agent-issue-to-pr` |
| other runs' uncommitted work is in it | `git status --porcelain` | **2** trees: `infra/agent/` (22:04), `platform/pm-agent/` (22:09) — `stat -c %y` |
| its `main` is stale | `git rev-parse main` vs `origin/main` | `4386d14` vs `22c94ef`, **2 behind** |
| worktrees registered / already merged | `git worktree list --porcelain` + `git merge-base --is-ancestor <b> main` | **42** branches, **31** merged |
| nested worktrees are a gate hazard | `grep -rl '\.claude' conformance/tests platform/monitoring/tests` | **9** scripts carry an explicit exclusion |
| the 18× double-count | read `platform/monitoring/tests/run.sh:115-123` | in-tree comment, observed 2026-09-12 |
**A claim of mine was wrong and is corrected in the doc.** I had it recorded that
`git worktree remove` is blocked by the agent sandbox. Provoked rather than assumed: created
a throwaway detached worktree in the scratchpad and removed it — **rc 0**, and
`git worktree list` no longer shows it. §0 therefore tells agents to try it, and the
`rework/<pr-number>` escape hatch is now scoped to *someone else's* stale worktree holding a
branch, which is a real and separate problem (31 of them).
`spec-immutability` is avoidable-not-tolerated: taken from
`decisions/2026-10-01-render-selftest-runs-in-gate.md`, which records
`stage spec-immutability: pass` under the two-mount shim plus `-e SPEC_REPO=/home-network-k3s`.
**Gate — `rc 3`, UNDETERMINED, and I am not calling it green.** Pinned toolbox, from this
worktree, `DEV_KUBECONFIG=/dev/null` and an `ENGINE` shim bind-mounting both the main
checkout's `.git` (at its own host path) and the sibling spec repo read-only with
`-e SPEC_REPO=/home-network-k3s`:
ENGINE=<two-mount shim> DEV_KUBECONFIG=/dev/null ./infra/devcontainer/dev.sh run bash -c './ci/gate.sh' # rc 3
| stage | result |
|---|---|
| spec-immutability | **pass** — it genuinely RAN; the second mount is what makes it run from a worktree |
| approval-policy | pass, but **N/A**: `event='none'`. It cannot see a PR locally, so this green says nothing. See below |
| decisions-log | pass — the three required headings and the frozen-archive pin |
| lint · l0 · render-golden · l1 | pass (L1: 3 offline checks, 0 failures, 0 skips, 0 unwired) |
| gitea-settings | **SKIPPED** — `SETTINGS_API_TOKEN` unset; it exists only in CI |
| conformance (L2/L3) | SKIPPED — `CLUSTER_AVAILABLE!=true`; the decision notes no cluster-needing requirement was touched |
`gitea-settings` is the *only* stage that did not run, and it cannot be made to run from a
workstation, so rc 3 is the ceiling for any local run — not a defect in this branch. The
first gate attempt returned rc 3 for a different and real reason (`HEAD is not ahead of
origin/main`: I had not committed yet, so the touched-requirement set was empty by default
rather than by verification); it was re-run after committing, and the table above is the
post-commit run. §3 now records both expected skips, because it previously named only
`spec-immutability`.
## What I did NOT verify
- **GATE: UNVERIFIED at the time of writing.** The pinned-toolbox result for this branch and
its exit code are reported in the PR, not predicted here. **A local rc 3 is not green** and
will not be described as one.
- **CI gate: RED, measured — `MERGE GATE: BLOCKED`, one failing stage.** Run 245 on PR #56,
head `b988da8b`, 1m47s. The only failure is `approval-policy`: *"a sensitive change lacks a
non-author approval"*, `sensitive paths touched: CLAUDE.md`, author `gitea-admin`. Every other
stage passed — `decisions-log`, `lint`, `l0`, `render-golden`, `l1`, and `gitea-settings`
(which can only run in CI, and reported `required_approvals = 0`,
`dismiss_stale_approvals = true`). `spec-immutability` SKIPPED in CI (no sibling spec repo in
the CI workspace — the inverse of the local run, where the two-mount shim made it pass) and
`conformance` SKIPPED. **Note `gate / conformance (pull_request)` reports status `success`
with description "Has been skipped"** — CLAUDE.md §2b's trap, live on this very PR. Nothing
in this branch is broken; the red is the structural human gate, below. *Measured at
`b988da8b`; this entry was then amended to record it, so the head SHA in the PR is newer than
the run quoted here and CI re-ran on the amended commit.*
- **This PR is a sensitive-path PR and is CI-RED on `approval-policy` until a human acts.**
`CLAUDE.md` is in `infra/gitea/approval-policy.json`'s `sensitive_paths` ("the delivery
contract agents follow"), so the stage requires an approving review from someone who is not
the author, or an `/approve-override <reason>` posted by an administrator **as a PR review
of type "Comment"**, not in the plain comment box. `ci/approval-policy.sh` run locally
reports N/A (it cannot see a PR), so the local gate cannot catch this and a green local run
says nothing about it. **I have not posted an override and must not** — CLAUDE.md §1 forbids
an agent clearing this on its own PR even though `gitea-admin` holds `owner` and could.
- **Nothing here is enforced.** §0 is prose. There is no gate stage that detects work done in
the shared checkout, no check that a worktree is outside the repo root, and no check that a
branch was cut from `origin/main`. Every other rule in CLAUDE.md that agents kept breaking
(`DECISIONS-LOG.md` appends, the three handoff headings) ended up as a gate stage, and that
is the honest follow-up here. I did not write one: the ask was documentation, and an
enforcement stage lands in `ci/**`, which is itself a sensitive path and deserves its own PR.
- **I did not clean up the 31 stale merged worktrees or the 35 nested under
`.claude/worktrees/`.** They are other sessions' workspaces; removing them is an operator
action, and §0 explicitly tells agents not to remove worktrees they did not create.
- **I did not touch the untracked `infra/agent/` and `platform/pm-agent/` trees** sitting in the
shared checkout. They are another run's in-flight work. Whose, and whether they are wanted,
is unknown to me.
- **`docs/plans/ssd-etcd-execution-runbook.md:18` still points at a `.claude/worktrees/` path**
inside the repo. Left as-is deliberately: that runbook is marked COMPLETED/historical and
describes the now-decommissioned dev cluster, so the path is a record of what was done, not
an instruction. It does mean a grep for in-repo worktree paths is not yet clean.
- **No runtime, cluster or Flux behaviour was touched or checked.** This branch changes three
Markdown files; `kubectl` was not run.
+2 -1
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@@ -26,7 +26,8 @@ The fix is the obvious one for concurrent appenders: **stop sharing a file**. Ea
handoff is its own file. Two agents writing handoffs touch disjoint paths, so there is
nothing for git to merge and nothing to conflict. This scales to any number of parallel
branches with zero coordination — which is the point, since the agents are deliberately
isolated from each other in separate worktrees and cannot coordinate.
isolated from each other in separate worktrees (required by `CLAUDE.md` §0) and cannot
coordinate.
There is deliberately **no index file** and no counter. An index would be a shared
mutable file — exactly the thing that just failed — and a sequence number would have