13 Commits
Author SHA1 Message Date
jakman85andClaude Opus 5 a92fa11701 feat(monitoring): scrape Longhorn + cert-manager — 8 alerts were structurally inert
An alert rule whose metric is never scraped is not a broken alert, it is an ABSENT
alert that reads as a present one. `longhorn_volume_robustness == 2` over a TSDB
with no longhorn_* series returns no vector: permanently quiet, permanently
"healthy", indistinguishable from a correct rule. It survives review (the PromQL is
right), it survives `promtool test rules` (the unit test supplies the series
itself), and it appears on no dashboard.

VERIFIED ABSENT ON PROD before this change (re-verified 2026-09-13 21:0xZ, ~15h
after the first audit, because a stale reading is not evidence):

  count(longhorn_volume_robustness)                      => (empty)   4 rules inert
  count({__name__=~"certmanager.*"})                     => (empty)   3 rules inert
  count(hubble_drop_total) / {__name__=~"cilium.*"}      => (empty)   1 rule inert
  count by (job) (up)                                    => 20 jobs, none of them
                                                            Longhorn, cert-manager,
                                                            Cilium or Hubble

Consequence: storage health was unmonitored on the cluster whose prod-1 had just
had a failing SSD, and TLS expiry was unmonitored with the live `wildcard-home`
wildcard 89 days from expiry on an ACME DNS-01 renewal that can fail silently.

WHAT THIS CHANGES

  * platform/longhorn: `metrics.serviceMonitor.enabled: true` (the supported chart
    way — rendering longhorn 1.12.1 emits exactly 1 ServiceMonitor with the flag and
    0 without), plus networkpolicy-metrics.yaml. The NetworkPolicy is LOAD-BEARING,
    not belt-and-braces: measured with the monitor applied and no allowance, all 3
    targets were DISCOVERED and every scrape failed `context deadline exceeded`
    after 10.0s — a drop, not a refusal — while curling the endpoint from inside
    the manager pod returned 200 in 0.031s. Longhorn 1.12.1 ships 6 NetworkPolicies
    of its own, guarded on `networkPolicies.restrictInternalTraffic` (default TRUE)
    and NOT on `networkPolicies.enabled`, so they are effectively unconditional and
    the manager policy admits only same-namespace Longhorn components. The one-line
    alternative (restrictInternalTraffic: false) was rejected: it deletes the
    internal-traffic restriction across all six components to open one port to one
    namespace, trading an R-SEC-02 control for an observability one when the two do
    not conflict. This policy is Ingress-only, ns monitoring -> app=longhorn-manager,
    TCP 9500 only; 9502/9503 (webhook, recovery backend) stay closed.

  * platform/cert-manager: `prometheus.servicemonitor.enabled: true`. Chart default
    already serves 9402; only the monitor was missing. No NetworkPolicy needed —
    neither ns cert-manager nor ns monitoring carries one. NOT paired with
    prometheus.podmonitor.enabled: the chart calls `fail` if both are set.

  * platform/kubevirt: KubeVirtVMLaunchFailing queried
    `kubevirt_vmi_phase_count{phase="Failed"}`, which DOES NOT EXIST on the deployed
    KubeVirt — a different flavour of the same defect, with the scrape target up and
    healthy. Prod has only `kubevirt_vmi_info` and `kubevirt_vmi_number_of_outdated`;
    the only phase-bearing names are the phase_transition_time histograms. Corrected
    to `kubevirt_vmi_info{phase="failed"}` — LOWERCASE, because KubeVirt lowercases
    the value (observed `phase="running"` for the unifi VMI) and a capital-F matcher
    would select nothing and be exactly as inert.

PROVEN, NOT ASSERTED. The rendered ServiceMonitors were applied to prod by hand and
the metrics observed to land, then REMOVED again so the merge's Helm upgrade creates
and owns them rather than colliding with an unowned object:

  count(up{job="longhorn-backend"})        => 3        (all three managers, up==1)
  count({__name__=~"longhorn.*"})          => 8717     (was empty)
  count(longhorn_volume_robustness)        => 44
  up{namespace="cert-manager"}             => 3 targets, all 1
  count({__name__=~"certmanager.*"})       => 104      (was empty)
  wildcard-home days to expiry             => 89.2, ready_status{condition="True"}=1

All 58 alert rules in the repo were then evaluated against prod one by one: every
one returns a result without error, and exactly ONE fires.

TRIAGE OF THE ONE NEWLY-FIRING ALERT — A TRUE POSITIVE, NOT TUNED AWAY.
LonghornVolumeCapacityHigh on the Prometheus TSDB volume:
`longhorn_volume_actual_size_bytes / longhorn_volume_capacity_bytes` = 0.971
(48.6 GiB allocated of 50 GiB) while the kubelet's view of the same filesystem is
only 20.4% used. Longhorn is not reclaiming freed blocks, so ~48.6 GiB x 3 replicas
is committed for ~10 GiB of real data. On a cluster whose failure mode is disk
pressure and whose etcd WAL shares a spindle with Longhorn, that is worth knowing
and was invisible until now. The threshold is left alone; the follow-up is
filesystem trim, not a bigger number.

THE GUARD (conformance/tests/l0-static/alert-metrics-have-scrape-targets)

Whole-repo L0 invariant, 118 assertions. It crosses from each alert to the scrape
config that makes its metric exist: every metric name is claimed by exactly one
declared owner, and each owner's enabling declaration is re-proven against the
working tree on every gate run, including the negative conditions that defeat an
enablement without deleting it. `up{job="X"}` is audited on its own axis, because
`up` always exists: where this repo authors a Service and a ServiceMonitor in the
same file, the monitor's endpoint port must be a port that Service defines.

It DECLARES conformance.home.k3s/scope: "whole-repo" and adds NO ci/l0.sh stage —
the whole-repo-invariants-wired meta-test fails the gate if one reappears.

PROVEN ABLE TO FAIL, five ways, each reverted:
  1. an alert on a fabricated metric          -> FAIL "claimed by NO entry"
  2. longhorn metrics.serviceMonitor removed  -> FAIL "no longer matches"
  3. networkpolicy-metrics.yaml unwired       -> FAIL "the monitor alone is NOT enough"
  4. cert-manager podmonitor also enabled     -> FAIL "FORBIDDEN pattern"
  5. a register entry made stale / removed    -> FAIL in both directions

TWO SHRINK-ONLY REGISTERS, because a blanket fail would make the gate red until
work that is not this change lands, and a disabled gate protects nothing:

  * KNOWN_UNWIRED_METRICS (1): hubble_drop_total. See below.
  * KNOWN_UNWIRED_JOBS (12): every apps/* `<app>-down` SLI rule is ALSO inert, and
    this was found by the re-audit, not previously known. The rendered
    ServiceMonitors name `port: metrics` and NOT ONE of the twelve app Services
    defines a port of that name (zero occurrences of `name: metrics` across all
    twelve manifests); prod confirms none of the twelve jobs appears in `up`. This
    is the nastiest variant of the class: `up` exists in abundance so nothing looks
    wrong, and PrometheusTargetsMissing cannot see it either, because a target that
    was never discovered has no up series to be 0. Closing it needs an exporter per
    app (Plex, Pi-hole, Jackett, qBittorrent, Sonarr, Radarr, Seerr speak no
    Prometheus) — except keycloak, where the live jobs are keycloak-service /
    keycloak-discovery and the rule is a rename away from being live.

NOT DONE HERE, DELIBERATELY: Hubble. hubble.metrics.enabled RECONFIGURES THE CNI —
it opens 9965 on every cilium-agent and rolls the DaemonSet across all three nodes,
serialised by this repo's own maxUnavailable: 1 (set after the 2026-09-01
k8sServiceHost outage, where a CNI roll deadlocked 2 of 3 agents). It also needs a
matching edit to roles/cilium/templates/cilium-values.yaml.j2 in the same commit,
because platform/cilium/helmrelease.yaml carries a [parity] contract against it and
a rebuilt node would otherwise bootstrap a CNI config that disagrees with the
reconciled one. Recommended as its own change on the cilium Kustomization, with the
Ansible parity edit, a narrow labelsContext, and a one-node canary — not smuggled in
here.

ALSO FOUND, NOT FIXED HERE: kube-state-metrics is OOMKilled every ~10 minutes on
prod (90 restarts in 16h against a 128Mi limit) while its logs show the
custom-resource-state factory reloading every 3 seconds. Thirteen alert rules read
kube_* metrics, so those rules are INTERMITTENTLY inert — the same defect class,
arriving through a crashloop rather than a missing monitor. Needs its own change.

Co-Authored-By: Claude Opus 5 <[email protected]>
2026-09-13 16:21:44 -05:00
jakman85andClaude Opus 4.8 cbc2301b30 docs: reconcile docs/comments with post-upgrade cluster state
Text-only cleanup after the upgrade campaign. Updates stale version
strings, prose, and comments to the verified current facts; no
Kubernetes behavior or version pins changed except the kubectl
toolchain bump (below).

Verified facts applied: k3s v1.36.4+k3s1, Debian 13 trixie,
Cilium 1.20.1 / Gateway API v1.6.1, Longhorn 1.12.1, node RAM 24 GiB,
dedicated virtio2 SSD etcd disk per node, Velero chart 12.x / v1.18,
Grafana 13.2.0.

- Version strings across infra/ and platform/ READMEs + comments
- kubectl toolchain 1.31.4 -> 1.36.4 (devcontainer/ci/conformance
  versions.env; 1.31 vs a 1.36 cluster exceeded the +-1 skew)
- Retired-single-apps-Kustomization refs -> apps-wave-0/1/2 + apps-vms
  with per-wave SOPS decryption (flux/clusters docs + bootstrap.sh)
- COMPLETED/historical banners on the three executed plan docs
- Resolved TODO(WS-SEC) markers -> Renovate-maintained ranges
- Appended dated DECISIONS-LOG entry (2026-08-30) superseding the
  2026-08-26 LIVE STATE line

Left as revalidation items (not blind-edited): external-snapshotter
v8.2.0 vs 1.36, Cilium ext_authz/forward-auth relevance under 1.20.1,
conformance ImageVolume feature-gate assertions under 1.36.

Co-Authored-By: Claude Opus 4.8 <[email protected]>
2026-08-30 15:13:12 -05:00
jakman85andClaude Opus 4.8 10b5228105 cert-manager sequential upgrade -> 1.21 (k8s 1.36 catch-up, final hop)
Co-Authored-By: Claude Opus 4.8 <[email protected]>
2026-08-30 11:52:42 -05:00
jakman85andClaude Opus 4.8 c868382f5a cert-manager sequential upgrade -> 1.20 (k8s 1.36 catch-up)
Co-Authored-By: Claude Opus 4.8 <[email protected]>
2026-08-30 11:48:26 -05:00
jakman85andClaude Opus 4.8 e67eee527a cert-manager sequential upgrade -> 1.19 (k8s 1.36 catch-up)
Co-Authored-By: Claude Opus 4.8 <[email protected]>
2026-08-30 11:42:40 -05:00
jakman85andClaude Opus 4.8 e42c4a32f1 cert-manager sequential upgrade -> 1.18 (k8s 1.36 catch-up)
Co-Authored-By: Claude Opus 4.8 <[email protected]>
2026-08-30 11:35:18 -05:00
jakman85andClaude Opus 4.8 7d2f92b25e cert-manager -> 1.17 (k8s 1.36 catch-up, hop 1/5)
Co-Authored-By: Claude Opus 4.8 <[email protected]>
2026-08-30 11:26:05 -05:00
jakman85andClaude Opus 4.8 cdb546bc6e fix(cert-manager): DNS-01 self-check via public resolvers (split-horizon)
The wildcard cert stalled: challenge Presented=true (Cloudflare TXT created OK —
token works) but propagation self-check looped 'DNS record not yet propagated'.
Verified the record IS publicly resolvable (1.1.1.1/8.8.8.8); the NAT'd k3s-dev
cluster's own DNS just can't see it. Set dns01RecursiveNameservers=1.1.1.1:53,
8.8.8.8:53 + dns01RecursiveNameserversOnly=true so the self-check bypasses cluster
DNS. Realises the pre-existing TODO in this file.

Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>
2026-08-17 01:44:28 -05:00
jakman85andClaude Opus 4.8 ca982864fc fix(platform): controllers/configs split so CRDs precede their CRs
Un-suspend deadlocked: the single platform Kustomization applies HelmReleases
(which register CRDs) AND custom resources of those CRDs (ClusterIssuer,
Certificate, Kyverno ClusterPolicies) in ONE pass. Flux's server-side apply
fails atomically ('no matches for kind ClusterIssuer') → nothing installs, so
the CRD-registering HelmReleases never run either. Classic ordering deadlock.

Fix (flux2 controllers/configs pattern, applies to dev+prod equally — no
R-ENV-02 divergence): add a platform-config Flux Kustomization (dependsOn
platform, wait) carrying the CRs; platform keeps only the controllers.
- New clusters/base/platform-config.yaml (path ./platform-config, substituteFrom
  cluster-vars, no decryption — no SOPS content); wired into base + apps now
  dependsOn platform-config (transitively waits for platform).
- platform-config/ references the CR files IN PLACE via ../platform/... (Flux
  builds LoadRestrictionsNone; Kyverno policies must stay under platform/kyverno/
  for the CI L0  gate). CR resources dropped from the platform
  component kustomizations (cert-manager, gateway, kyverno).
- Authored the missing Cilium L2 resources (were only a TODO): CiliumLoadBalancerIPPool
  (dev NAT 10.73.0.240-.250) + CiliumL2AnnouncementPolicy (ens*), so Gateway
  LoadBalancer listeners get a VIP. Prod range must be parameterized later.

Verified: platform build has zero CRs; platform-config build has 2 ClusterIssuers,
6 ClusterPolicies, Certificate, Gateway, both Cilium L2 CRs; dev/prod build; gate PASS.

Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>
2026-08-17 01:06:23 -05:00
jakman85andClaude Opus 4.8 275ac466b2 wire Cloudflare DNS token secrets + exempt *.sops.yaml from yamllint
- Rename the committed encrypted secrets to canonical cloudflare-api-token.sops.yaml
  (cert-manager + external-dns namespaces) and uncomment the resource lines in both
  kustomizations, so cert-manager DNS-01 + ExternalDNS get the token at reconcile.
- Exempt **/*.sops.yaml from ci/yamllint.yaml: SOPS re-emits encrypted files with its
  own indentation + long ENC[...] lines (never hand-edited), which was failing the lint
  gate on main after the secrets were committed. Same treatment as **/vault.yml.

Both Secrets confirmed present + encrypted in the platform build; gate PASS.

Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>
2026-08-17 00:35:45 -05:00
jakman85 06fa317063 Added fixes before token usage cutoff. Added required credentials for dns api for cert-manager and external-dns 2026-08-16 23:12:25 -05:00
jakman85andClaude Opus 4.8 a108d5ab98 correction: credential-forward + unified graph; activate SOPS (author-first)
Operator directive: don't diverge architecture to avoid asking for credentials;
provision them upfront via SOPS and keep the existing (unified) graph.

Roadmap reconciliation: Phase 2 = Network/Storage/TLS/DNS/Ingress, so
cert-manager/externaldns/gateway (the credential-gated pieces) ARE Phase 2;
monitoring is Phase 4. Earlier A2/rollout scope was inverted by credential-avoidance.

Reverts (credential-driven): remove clusters/dev/rollout/ + the $patch:delete's;
restore unified base graph (dev = ../base + cluster-vars + SOPS decryption,
R-ENV-02 intact); restore monitoring files (Phase 4). Kept non-credential
improvements: tofu for_each/rejoin, Kyverno parametrization + webhook excludes.

platform/kustomization.yaml now phased (single shared list): Phase-2 set =
kyverno, cilium, longhorn, cert-manager, externaldns, gateway; later components
commented with phase markers.

SOPS activated: .sops.yaml at repo root; bootstrap/sops/secret-templates/*.yaml.example
for all secrets (cloudflare x2, grafana, alertmanager-smtp, keycloak, oauth2-proxy, pia);
bootstrap/sops/CREDENTIALS.md checklist; pre-wired commented cloudflare-api-token lines
in cert-manager + externaldns; filled non-secret ACME email. Agents never touch real
secret values (operator encrypts).

Validated: kubectl kustomize dev(unified)/prod/platform(Phase-2 only), templates inert,
make -C ci gate PASS.

Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>
2026-08-16 22:09:20 -05:00
jakman85andClaude Opus 4.8 af4f6c07ae T-0.1 Flux GitOps layout + dev/prod overlays + platform component skeletons (R-GITOPS-01/03, R-ENV-02, R-PLAT-01)
Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>
2026-08-16 00:08:31 -05:00