Files
home-network-k3s-impl/runbooks/node-memory.md
jakman85andClaude Opus 5 b7341b329b fix(runbooks): declare whole-repo scope, drop the bespoke l0 stage, +cnpg-primary-spread
Three corrections after rebasing onto main.

1. THE GUARD CAUGHT A REAL ONE ON ITS FIRST CONTACT WITH main. main had gained
   `CNPGPrimariesCoLocated` (platform/cnpg/alerts.yaml) pointing at
   /runbooks/cnpg-primary-spread, with no runbook. The check failed the rebase exactly as
   designed — 46 annotations, 35 names, 34 present — naming both the missing file AND the
   missing configMapGenerator entry. runbooks/cnpg-primary-spread.md now exists: what
   co-located primaries actually cost here (blast radius, not an outage, because
   instances: 3 + required anti-affinity), why the drift is uncorrectable-by-declaration
   (CNPG has no primary-placement field), the readiness gate that keeps the rule quiet
   during a real node outage, and the ~9s-per-database switchover rebalance, one cluster
   at a time. The 2026-09-07 outage in which all three primaries sat on one node is the
   reason the alert exists at all.

2. WHOLE-REPO SCOPE, NOT A HAND-WRITTEN STAGE. main's refactor replaced ci/l0.sh's
   per-check "UNCONDITIONAL" stages with a declaration:
   `conformance.home.k3s/scope: "whole-repo"`, unioned into every gate run by Stage 3b's
   `--include-scope`. My +38-line Stage 3f is removed (ci/l0.sh is now byte-identical to
   main) and the annotation is declared instead. Assertion (7) of the check was rewritten
   to match: it no longer asserts its own path appears in ci/l0.sh — it asserts the test
   DECLARES the scope and that ci/l0.sh still passes --include-scope, since neither half
   alone makes the check load-bearing. That matters here because
   ci/touched-requirements.sh maps platform/monitoring/* to "R-OBS-01 R-OBS-02", not
   R-OBS-04, and maps platform/kubevirt/* and runbooks/* to nothing at all.

3. A FACTUAL CORRECTION IN ALL 35 RUNBOOKS. Every page claimed `dev.sh` defaults its
   current-context to k3s-dev. main's `9b4744d fix(devcontainer): dev.sh defaults to
   prod` made that false, and a runbook that misstates which cluster a command talks to is
   worse than one that says nothing. The pages now say what is durably true: the default
   has already changed once, so naming `--context k3s-prod` is what makes a command mean
   the same thing next month, and the per-invocation banner is there to be read. The
   check's own failure message was corrected the same way.

Re-verified after all three: check green at 374 assertions (46 annotations, 35/35 runbooks
present, 35/35 projected), re-applied to prod, and re-probed in-cluster through the
Gateway — node-down, keycloak-down, keycloak-client-secrets, cnpg-archiving,
longhorn-faulted, vpn-down, node-io and cnpg-primary-spread all HTTP 200 with
text/plain; charset=utf-8 and 8.9-12.1 KB of real body; /runbooks/ index 200; an unknown
name 404s with a pointer rather than a blank page; and homepage still answers the apex `/`,
confirming Gateway API longest-path precedence.

Full merge gate: PASS (spec-immutability, lint, l0, render-golden, l1 all green;
prom-rules SKIPPED for want of promtool in the image; L2/L3 SKIPPED, no cluster).

Co-Authored-By: Claude Opus 5 <[email protected]>
2026-09-13 00:00:24 -05:00

124 lines
7.1 KiB
Markdown

# node-memory — Memory pressure high on a node
**Alert:** `NodeMemoryPressureHigh` (warning, 10m)
**File:** `platform/monitoring/alerts.yaml`, group `platform-health.nodes`
**Expression:** `(1 - (node_memory_MemAvailable_bytes / node_memory_MemTotal_bytes)) > 0.90`
## What this means here
Available memory has been under 10% for ten minutes. These are HP EliteDesk 800 G5 Minis with
~22 GiB usable, running the whole platform plus KubeVirt VMs on three nodes, so the headroom is
genuinely thin and this alert is a capacity signal rather than a bug signal most of the time.
Two cluster-specific facts change how you read it:
**`SwapTotal == 0` is not evidence swap is off.** On 2026-09-07 all three prod nodes came back from a
reboot with **977 MiB of swap ACTIVE** (`/dev/sda4` on prod-1 and prod-3, `/dev/nvme0n1p4` on prod-2)
while the Ansible role's commented-out fstab line reported success.
`systemd-gpt-auto-generator` claims any GPT partition typed
`0657fd6d-a4ab-43c4-84e5-0933c84b4f4f` straight from the partition table and synthesises a `.swap`
unit into `/run/systemd/generator.late/` — it never reads `/etc/fstab`. The fix masks `swap.target`
(the single choke point for gpt-auto, fstab-generator and cryptsetup-generator). If a node is
swapping, the kubelet's memory accounting is lying to you and eviction will misbehave. Check
explicitly with `swapon --show`, never `SwapTotal`.
**There is a kernel memory-reporting bug on all three nodes.** `infra/PROD-PROVISIONING.md` §0b
records an EFI memattr defect that once presented `k3s-prod-1` as having **2.6 GiB usable of 16 GB**.
It needs kernel ≥ 6.13 and all three nodes are exposed (prod-3 publishes `MEMATTR=0xbeece018` too).
If `MemTotal` looks absurd rather than merely tight, suspect this before suspecting a leak.
## Running the commands in this runbook
`kubectl` does not work on the operator workstation. The toolchain lives only in the pinned dev
container, and the host's `k3s-oidc` context hangs on a browser prompt once its token expires —
that hang is not the cluster being down. Every command below runs as:
infra/devcontainer/dev.sh run bash -c 'kubectl --context k3s-prod get nodes'
Always pass `--context k3s-prod` explicitly. `dev.sh` merges BOTH clusters into one kubeconfig and
picks a current-context per invocation, and **that default has already changed once** — it was k3s-dev
until dev was decommissioned on 2026-09-13, and is k3s-prod now. A command that names its context means
the same thing next month as it does today; one that relies on the default does not, and the failure is
silent (it answers confidently about the other cluster). `CLUSTER=prod infra/devcontainer/dev.sh run
kubectl ...` selects it explicitly, and every invocation prints a banner naming the cluster it is about
to talk to — read it. Do not run two `dev.sh` invocations at once; they share one container and
interfere.
USE FULLY-QUALIFIED RESOURCE NAMES, ALWAYS. Three CRDs on this cluster register the kind `Backup`:
`longhorn.io/v1beta2`, `postgresql.cnpg.io/v1` and `velero.io/v1`. The bare short name resolves to
Longhorn's, which holds zero objects — so `kubectl get backup -A` prints **"No resources found"** on
a cluster holding 6 Velero backups and 27 CNPG backups. Verified on prod 2026-09-13. Reading that as
"the backups are gone" and acting on it turns a false negative into real data loss. Write
`backups.velero.io`, `backups.postgresql.cnpg.io`, `clusters.postgresql.cnpg.io`,
`settings.longhorn.io`, `volumes.longhorn.io`, `nodes.longhorn.io`.
Mutating kubectl (`apply`, `patch`, `annotate`, `rollout`) and `flux reconcile` are blocked for
agents here: every durable change goes through git (`git push origin main` **is** the deploy).
Where this runbook gives a mutating command it is for an operator, and it says so.
## First commands
```
infra/devcontainer/dev.sh run bash -c \
'kubectl --context k3s-prod top nodes; echo; kubectl --context k3s-prod get nodes -o custom-columns=NAME:.metadata.name,MEM:.status.capacity.memory,PRESSURE:.status.conditions[?\(@.type==\"MemoryPressure\"\)].status'
```
Who is using it — and is swap actually off?
```
ssh k3s-prod-1 'free -h; echo; swapon --show; echo "(empty output above = swap really off)"; echo; cat /proc/pressure/memory; echo; ps -eo pid,rss,comm --sort=-rss | head -15'
```
Biggest consumers in the cluster, and anything that has been OOM-killed:
```
infra/devcontainer/dev.sh run bash -c \
'kubectl --context k3s-prod top pods -A --sort-by=memory | head -20; echo; \
kubectl --context k3s-prod get events -A --field-selector reason=OOMKilling --sort-by=.lastTimestamp | tail -20'
```
## Likely causes, most likely first
### 1. A monitoring component grew past its limit
This is the one with real history. When kube-prometheus-stack went 65 → 88 it shipped Grafana 13 and
**Grafana OOM-looped** — "the hidden blocker that stalled the whole kps upgrade and the platform
tier". Limits went 256 → 512 → **768Mi** for Grafana and Prometheus 2 → **3Gi** (commit `b2b1aa5`).
Prod keeps 30d retention / 45GiB retentionSize on a 50Gi PVC, so Prometheus is legitimately the
largest single consumer. Remediation: raise the limit in
`platform/monitoring/kube-prometheus-stack.yaml` and push; do not restart it in a loop.
### 2. A KubeVirt VM, especially a TCG-emulated one
VMs are the largest discretionary consumer. `useEmulation: false` is set deliberately (on v1.9
`true` silently forces TCG), but leaked test namespaces running emulated VMs have caused API blips
before and were deleted. Check `kubectl --context k3s-prod get vmi -A` and the `virt-launcher-*` pods'
memory.
### 3. Swap silently back on after a reboot
See above. Verify with `swapon --show` and `systemctl is-enabled swap.target` (should be `masked`).
`node_health` now reports `memory.swap_persistence` for this. The fix is the Ansible role; an
operator runs it.
### 4. Genuine capacity exhaustion
If nothing is anomalous, the node is simply full. The node vCPU count was already raised 6 → 8 for
CPU pressure; memory is next. A bpg/OpenTofu memory change **reboots the VM**, so roll **one node at
a time and wait for Longhorn `robustness=healthy` between each** — the same discipline as every other
reboot here.
### 5. A leak in an app-tier workload
Nextcloud, Plex and the *arr stack are the usual suspects. Compare `top pods` against the previous
day in Grafana rather than guessing.
## When to escalate or stop
- **Escalate immediately if this is firing together with `node-io` or `node-down`** on the same node.
Memory pressure plus I/O pressure on an etcd member is the shape of the 2026-09-07 outage.
- **Do not add swap** to relieve this. Kubernetes does not want it here and the platform has already
been bitten by swap re-enabling itself.
- **Do not evict or drain** to free memory: this cluster does not drain (Longhorn rebuild cost). Kill
the specific offending pod instead, and only if you know what it is.
- Hand to the operator for anything requiring a VM resize or an Ansible run.
---
Source of truth: `runbooks/node-memory.md`. Index: `/runbooks/`
Records: `DECISIONS-LOG.md` (Grafana OOM, kps 65→88); commits `0e92d25`/`9d00a3f` (swap persistence);
`infra/PROD-PROVISIONING.md` §0b (EFI memattr).