Prod has been archiving WAL to `TBD-PROD-S3-BACKUP-ENDPOINT` since bootstrap. Verified live 2026-09-07 on all three CNPG Clusters: ContinuousArchiving=False, "unexpected failure invoking barman-cloud-wal-archive: exit status 4". Because archive_mode is ON, that is not a degraded backup — it is a DISK-FULL CLOCK. Postgres will not recycle a segment it has not archived, so keycloak-db's pgdata PVC is at 579 MiB used / 4360 MiB free and climbing monotonically. When it fills, the primary PANICs and takes SSO down, and with it kubectl OIDC, Grafana, Headlamp, Gitea and forward-auth. Wiring the endpoint is what lets Postgres drain the whole accumulated backlog in one pass. THE KNOB LAYOUT (three new, one repurposed) and why it is shaped this way. The operator created exactly ONE R2 bucket, `k3s-prod-backup`, but the two backup tools want differently-SHAPED values: the Velero chart takes `bucket` and `prefix` as separate fields, while CNPG's barmanObjectStore.destinationPath is one full s3:// URL whose first path segment IS the bucket. So: S3_BACKUP_ENDPOINT dev http://192.168.1.9:9000 prod https://<acct>.r2... S3_BACKUP_REGION dev us-east-1 prod auto VELERO_BACKUP_BUCKET dev velero prod k3s-prod-backup VELERO_BACKUP_PREFIX dev "" prod velero CNPG_BACKUP_PATH dev s3://cnpg prod s3://k3s-prod-backup/barman There is deliberately NO separate `S3_BACKUP_BUCKET`: CNPG's bucket already lives inside CNPG_BACKUP_PATH, and a second knob holding the same bucket name twice is a rotation waiting to drift. Three knobs, each shaped for its own consumer, and no two of them can contradict each other. TENANCY. Inside k3s-prod-backup, velero and barman get disjoint TOP-LEVEL prefixes — s3://k3s-prod-backup/velero/ and s3://k3s-prod-backup/barman/<cluster>/ — with the bucket ROOT left empty so a misrendered prefix lands somewhere obviously wrong instead of silently colliding. This is not tidiness: Velero ADOPTS every backup under its location and TTL-DELETES it on retention, so an overlapping prefix would let it reap WAL segments; and interleaving two Postgres servers' WAL into one prefix corrupts the chain outright. Dev↔prod isolation is doubly independent — different endpoint AND different bucket names — so neither cluster can reach the other's objects even with a mis-substituted prefix. DEV IS UNCHANGED, BYTE-FOR-BYTE, and that is asserted rather than assumed. Base defaults are dev's LIVE values (verified against the running cluster: BSL bucket=velero with NO prefix, region us-east-1; all three CNPG Clusters ContinuousArchiving=True at s3://cnpg on the MinIO), and the dev overlay now restates all five explicitly for the same reason LONGHORN_DATA_PATH is restated — a silent drift in base would ORPHAN the backups dev's PROVEN restore depends on. The empty-prefix case was the one real risk, and it is settled empirically: with prefix "" the chart omits objectStorage.prefix from the rendered BackupStorageLocation ENTIRELY (helm template, chart 12.1.0), so dev's live BSL is unchanged, not merely equivalent. R2's TWO GOTCHAS, both wired up front: - region must be exactly `auto`. head-bucket answers {"BucketRegion":"WNAM"}, which is a PHYSICAL LOCATION HINT, not a signing region. This was hardcoded us-east-1 inside the Velero HelmRelease — correct-by-accident for MinIO, wrong for anything else — so it is a knob now. - checksumAlgorithm: "". velero-plugin-for-aws v1.14.2 bundles an AWS SDK with flexible checksums on by default and sends x-amz-sdk-checksum-algorithm / x-amz-checksum-crc32 on every PUT; R2 rejects those with HTTP 400 InvalidArgument, failing every backup and every kopia blob upload. It must be PRESENT-but-empty (the plugin branches on the key existing), and the chart does emit an empty value — verified by rendering it. Harmless against MinIO, so it is unconditional rather than a fourth knob. WHAT THIS DOES NOT DO. Velero stays SUSPENDED on prod. `spec.suspend: true` is owned by field manager `flux` (verified: kustomize-controller's managedFields do not include f:suspend), so server-side apply will not strip it, and nothing here declares suspension — which would also trip R-ENV-03, since a prod overlay may patch only cluster-vars and a Flux Kustomization's `decryption`. Unsuspending is the operator's, after `standup.sh --s3-endpoint <r2> s3check` proves a round trip. NO DNS KNOB IS TOUCHED. BASE_DOMAIN stays prod.home.keithjackson.dev and every EXTERNALDNS_* value is untouched. The apex inversion on work/prod-standup-campaign was deliberately NOT carried: this branch ports that branch's R2 reasoning knob by knob, and merges nothing. VERIFIED: ci/l0.sh green (flux-postbuild-substitution 272 assertions, 0 hazards, 33 knobs defined / 28 referenced, every new token resolved in BOTH overlays); render-golden, lint, schema, spec-immutability green; touched requirement R-STATE-03 covered. Refs R-STATE-03, R-IDP-05, R-ENV-02, R-ENV-03. Co-Authored-By: Claude Opus 5 <[email protected]>
clusters/
Flux entrypoints and the environment-overlay model (R-ENV-02, R-GITOPS-01/02/03).
Governing spec: docs/05-gitops-and-delivery.md,
docs/02-environments-and-provisioning.md,
ADR-0004 (Flux).
Phase 0 scaffolding only. These are structurally-correct stubs. No cluster exists — nothing here reconciles until WS-INFRA delivers a cluster and bootstraps Flux (roadmap Phase 1).
Layout — base + overlay (never fork the base)
clusters/
base/ shared Flux objects (one authoring, both environments)
flux-system.yaml GitRepository — the reconciliation source (bootstrap → Gitea)
platform.yaml Flux Kustomization → ./platform (reconciles first)
apps-wave-0.yaml Flux Kustomization → ./apps/wave-0 (dependsOn platform-config)
apps-wave-1.yaml Flux Kustomization → ./apps/wave-1 (dependsOn apps-wave-0)
apps-wave-2.yaml Flux Kustomization → ./apps/wave-N (dependsOn apps-wave-N-1)
cluster-vars.yaml ConfigMap of overlay knobs (BASE defaults)
kustomization.yaml
dev/ ACTIVE build target — patches cluster-vars with dev values only
kustomization.yaml
prod/ DESIGN-ONLY until roadmap Phase 7 — patches cluster-vars with prod values only
kustomization.yaml
How the overlay model satisfies R-ENV-02
The base authors the reconciliation graph once. platform.yaml and the app-wave Kustomizations
(apps-wave-0/1/2.yaml — the single apps.yaml was retired; apps-vms.yaml deliberately omits it,
see below) declare postBuild.substituteFrom the cluster-vars ConfigMap. Platform and
app manifests use ${TOKEN} placeholders for every value that legitimately differs between
environments (issuer, replica counts, storage sizes, retention, node placement).
clusters/dev and clusters/prod differ ONLY by the values they patch into cluster-vars —
they add no resources of their own and never copy/fork a base manifest. Promotion to prod
(docs/02) is a change to the
prod overlay's variables, nothing else.
LAN addressing is a knob, not a literal (fixed 2026-08-31)
Until 2026-08-31 the base manifests hardcoded the dev LAN: the k3s API host Cilium dials, the
Cilium LB IP pool range, the pinned crafty/unifi L4 VIPs and the off-cluster S3 backup endpoint. That
broke R-ENV-02 outright — clusters/prod would have rendered dev addresses (192.168.1.x) onto the
prod LAN (192.168.2.x). They are now the cluster-vars "LAN addressing" block
(K3S_API_HOST, CILIUM_LB_POOL_START/_STOP, UNIFI_L4_VIP, CRAFTY_L4_VIP,
S3_BACKUP_ENDPOINT, alongside the pre-existing GATEWAY_VIP), set explicitly by BOTH overlays.
Two rules when touching that block:
- Substitution coverage. A
${TOKEN}only resolves in a path whose Flux Kustomization declarespostBuild.substituteFrom: cluster-vars; anywhere else the literal string${TOKEN}ships to the cluster.apps-vmswas the one path without it and now has it — which means every shell${...}in a VM manifest's cloud-init must be escaped$${...}(seeclusters/base/apps-vms.yamlfor the full envsubst escape contract). GATEWAY_VIPmust be insideCILIUM_LB_POOL_START..STOP, and in practice equal to START: thesharedGateway pins no address, so Cilium LB-IPAM gives it the pool's first free IP while split-horizon CoreDNS answers with${GATEWAY_VIP}. A VIP outside the pool blackholes in-cluster hairpin traffic while the Gateway still looks healthy.
Values the operator has not decided are TBD-PROD-* placeholders, not guesses: prod inherits the
DEV base defaults if an overlay op is simply omitted, so an invalid value that fails loudly is
strictly safer than a plausible one that quietly comes up on the wrong network.
How Flux is pointed at an environment
flux bootstrap (run by WS-INFRA in Phase 1) targets one environment's path per cluster:
# dev cluster
flux bootstrap ... --path=clusters/dev
# prod cluster (Phase 7 only — design-only until then)
flux bootstrap ... --path=clusters/prod
Bootstrap materializes the flux-system Kustomization that renders the chosen overlay, which pulls
in base/ and applies the env-scoped cluster-vars.
Reconciliation order
GitRepository (flux-system)
│
▼
Kustomization: platform (./platform, substituteFrom cluster-vars)
│ healthy
▼
Kustomization: apps-wave-0 (./apps/wave-0, dependsOn platform-config, substituteFrom cluster-vars)
│ healthy
▼
Kustomization: apps-wave-1 (./apps/wave-1, dependsOn apps-wave-0)
│ healthy
▼
Kustomization: apps-wave-N (./apps/wave-N, dependsOn apps-wave-N-1)
Second-order CRDs need a THIRD pass (platform-config-cdi, added 2026-09-05)
The controllers/configs split (platform → platform-config) assumes a CRD is registered by the
controller install. CDI breaks that: cdi-operator.yaml registers only cdis.cdi.kubevirt.io,
and cdi-operator creates storageprofiles / datavolumes / datasources only after it has
reconciled the CDI CR. Since kustomize-controller server-side dry-runs every object in a pass
before applying any of them, having the CDI CR and the CDI StorageProfiles in one pass was a
deadlock, not a race: unknown kind → pass aborts → CR never applied → CRD never created →
platform-config can never converge → every tier below it blocked. Invisible on dev (its CDI CRDs
have existed for months); it cost 12h on prod's cold start.
So there is a third tier, platform-config-cdi (./platform-config-cdi, dependsOn: platform-config), and a rule:
A CR belongs in
platform-config-cdi, notplatform-config, when the CRD it needs is created by a controller at runtime rather than by a manifest in git.
apps-vms dependsOn it as well as platform-config, because CDI reads
StorageProfile/longhorn-vm at DataVolume provisioning time — a VM disk provisioned before that
profile exists is stamped RWO/Filesystem and is permanently not live-migratable.
Wave 0 dependsOn platform-config (transitively platform) so CNI/storage/TLS/DNS/gateway
exist before any workload reconciles. The app tier is split into dependency-ordered WAVES
(catalog/render.py --emit-waves): each apps-wave-<N> health-gates (wait:true) ONLY its own
wave, so a crashloop in a later wave can no longer stall an earlier wave or block new revisions.
See DESIGN-waves.md for the wave table + cutover runbook.
TODOs (later phases — do not action in Phase 0)
- Source cutover (WS-GITOPS, Phase 6):
base/flux-system.yamlcurrently points at the bootstrap source. After Gitea is onboarded, repointspec.urltogitea.home.keithjackson.devand keep an off-cluster mirror (specdocs/05"Source-of-truth",CONTRIBUTING.md). - SOPS decryption (WS-SEC, Phase 1): add
spec.decryption.provider: sops(age secret name only, never plaintext) to the platform/apps Kustomizations once the age key is bootstrapped (ADR-0007). - Split ordered Flux Kustomizations if intra-platform ordering needs to be explicit (e.g. a
separate
cilium/longhornKustomization othersdependsOn).