Files
home-network-k3s-impl/runbooks/node-disk.md
T
jakman85andClaude Opus 5 44983095e1 feat(runbooks): make the 42 alert runbook_url annotations resolve
Every platform-health alert rule carries
`runbook_url: "https://${BASE_DOMAIN}/runbooks/<name>"` — 42 annotations over 34
distinct names, across platform/monitoring/alerts.yaml,
platform/monitoring/pvc-capacity-alerts.yaml, platform/cnpg/alerts.yaml and
platform/kubevirt/alerts.yaml. There was no runbooks/ directory and no HTTPRoute
serving that path: an in-cluster probe of
https://home.keithjackson.dev/runbooks/node-down returned HTTP 404. Every alert that
reached a human handed them a dead link at the exact moment the documentation is read,
and the annotation made it look solved — the same green-surface-over-absent-mechanism
class as the import Job that reported success while storing placeholder secrets.

No alerts.yaml is touched and no runbook_url value changes. The existing URL scheme is
made to resolve instead.

WHAT LANDS
- runbooks/<34>.md — one per name, each grounded in this cluster's real topology and,
  where one exists, its real incident history: the 2026-09-07 k3s-prod-1 etcd I/O
  starvation (measured PSI 11.36 vs 0.75/1.29, the exact journal lines, the four
  mechanisms proven inert), the Longhorn reboot tax and the freeze/thaw of
  concurrent-replica-rebuild-per-node-limit, Cilium's once-resolved egress interface
  cache (Ifindex 3 against a live 1780) and the absence of OSS failover, the CNPG
  38-hour ContinuousArchiving=False with its measured 6.8 MiB/h disk-full clock and the
  2026-09-12 aggregation-scope fix, the 2026-09-06 Keycloak lockout in which all 12
  clients held literal placeholder secrets behind an entirely green cluster, the Velero
  R2 x-amz-tagging NotImplemented incompatibility and its v1.14.3-rc.2 pin, and swap
  re-enabling itself across reboots via systemd-gpt-auto-generator.
  Each page states what the alert means HERE, the first diagnostic commands, likely
  causes ordered by probability with a remediation each, and when to escalate or stop.
- Every page uses FULLY-QUALIFIED resource names and says why: three CRDs register the
  kind `Backup` here, the bare short name resolves to Longhorn's (zero objects), so
  `kubectl get backup -A` prints "No resources found" on a cluster holding 6 Velero and
  27 CNPG backups. Acting on that false negative is how a CLI quirk becomes data loss.
- Every page states that kubectl only works via
  `infra/devcontainer/dev.sh run bash -c '...'` with an explicit `--context k3s-prod`,
  because dev.sh defaults its current-context to k3s-dev.
- Pages also record which alert groups are INERT today (measured 2026-09-13: no
  Longhorn, cert-manager, Flux-controller or Hubble scrape job exists, so 13 rules
  evaluate against nothing) so nobody reads their silence as health.

SERVING — runbooks/serving/ plus clusters/base/runbooks.yaml
A two-replica nginx-unprivileged serving a ConfigMap generated from runbooks/*.md, at
the apex `/runbooks` prefix, in its own non-gating post-platform Flux tier
(dependsOn platform-config, wait:false) — the platform/homepage pattern, file for file.
- The service catalog cannot express this route: ingressRoutes[].host is pattern-bound
  to a single DNS label plus the apex, so the bare apex is unrepresentable, and there is
  no path field.
- Rejected: redirecting to the Gitea web UI. A runbook is read when the platform is
  broken, and Gitea is an app-tier workload whose own dependencies several of these
  runbooks document; Gateway API's RequestRedirect also has no "append .md" modifier,
  so it would need 34 hand-maintained ReplaceFullPath rules.
- configMapGenerator maps each file to an EXTENSIONLESS key (node-down=node-down.md),
  so /runbooks/node-down is a plain static lookup with no rewrite rule. Served as
  text/plain: the namespace has DNS-only egress, so a CDN markdown renderer could not
  load anyway.
- The tier declares NO postBuild.substituteFrom, deliberately: envsubst would run over
  the prose and silently empty every ${...} shell example (it fails open — the 2026-09-01
  emptied Cilium k8sServiceHost). The HTTPRoute omits `hostnames:` and inherits the
  https-apex listener's, so nothing needs substituting.

AUTH — PUBLIC, deliberately
auth-mode=none. Gating these pages behind oauth2-proxy/Keycloak would make
runbooks/keycloak-down unreadable when Keycloak is down and
runbooks/keycloak-client-secrets unreadable during the exact 2026-09-06 failure mode.
An operator who cannot log in is this route's primary reader. Content is operational
procedure only, no secrets. The rationale is recorded in an annotation on the HTTPRoute
so the route is left OUT of the Gateway ext-authz attachment when forward-auth
enforcement lands.

PROVEN — in-cluster probe through the Gateway on prod
  /runbooks/node-down        HTTP 200   8613 bytes  text/plain; charset=utf-8
  /runbooks/keycloak-down    HTTP 200   9378 bytes  text/plain; charset=utf-8
  /runbooks/cnpg-archiving   HTTP 200  11729 bytes  text/plain; charset=utf-8
  /runbooks/longhorn-faulted HTTP 200   9135 bytes  text/plain; charset=utf-8
  /runbooks/vpn-down         HTTP 200  11092 bytes  text/plain; charset=utf-8
  /runbooks/backup-failure   HTTP 200   9604 bytes  text/plain; charset=utf-8
HTTPRoute Accepted by io.cilium/gateway-controller on sectionName https-apex; the
`/runbooks` prefix wins over homepage's apex `/` by Gateway API longest-path precedence.

GUARD — conformance/tests/l0-static/alert-runbooks-resolvable (R-OBS-04)
363 offline assertions. It checks BOTH halves, because the regression is silent in both
directions: an alert with a new runbook_url and no runbook links to a 404, AND a runbook
committed without its configMapGenerator entry is in git, reviewed, merged, and still
404s in the cluster. Also asserts a quality floor so a stub cannot make the link look
fixed, and that route/listener/nginx prefix agree with the annotations.
Proven to fail, then reverted: a bogus runbook_url (2 FAIL), a runbook removed from the
generator (1 FAIL), and a 31-byte stub (7 FAIL).

Co-Authored-By: Claude Opus 5 <[email protected]>
2026-09-12 23:49:58 -05:00

7.2 KiB

node-disk — A node filesystem is filling up

Alert: NodeDiskFillingUp (warning, 15m) File: platform/monitoring/alerts.yaml, group platform-health.nodes Expression: node_filesystem_avail_bytes{fstype!~"tmpfs|overlay|squashfs"} / node_filesystem_size_bytes{...} < 0.10

What this means here

Less than 10% free on a real filesystem on a node, for 15 minutes. Read the mountpoint label first, because on these nodes it tells you which of two very different problems you have.

/data is the one that matters. Both the embedded etcd WAL (/data/k3s) and every Longhorn replica (/data/longhorn) live on that single partition — node_baseline_etcd_source: shared-data-partition, not a dedicated device, and the exit condition for splitting them is still open (infra/PROD-PROVISIONING.md §2). If /data fills:

  • etcd cannot write its WAL. A control-plane member with a full WAL partition does not degrade gracefully; it stops, and this is a 3-member cluster.
  • Longhorn stops being able to hold replicas and volumes go degraded, which triggers rebuilds, which need more space.

So /data at 10% free is not a warning, it is the last comfortable moment to act.

/ filling up is usually logs, container images or a stuck journal. Lower stakes, but there is history: in the dev era the host root filled to ~99% because VM disks sat under a snapper-snapshotted subvolume, and the hypervisor paused the k3s VMs on I/O error. Recovery was deleting 11 snapper timeline snapshots plus virsh destroy on the paused VMs (which were holding rsync-unlinked inodes): 99% → 30%.

Longhorn's own guard rails are already tight and are why this alert usually fires before anything breaks: storageReservedPercentageForDefaultDisk: 20, storageMinimalAvailablePercentage: 25, storageOverProvisioningPercentage: 200.

Running the commands in this runbook

kubectl does not work on the operator workstation. The toolchain lives only in the pinned dev container, and the host's k3s-oidc context hangs on a browser prompt once its token expires — that hang is not the cluster being down. Every command below runs as:

infra/devcontainer/dev.sh run bash -c 'kubectl --context k3s-prod get nodes'

Always pass --context k3s-prod explicitly. dev.sh merges both clusters into one kubeconfig and defaults its current-context to k3s-dev, so a command without --context silently answers about the wrong cluster. (CLUSTER=prod infra/devcontainer/dev.sh run kubectl ... is equivalent.) Do not run two dev.sh invocations at once — they share one container and interfere.

USE FULLY-QUALIFIED RESOURCE NAMES, ALWAYS. Three CRDs on this cluster register the kind Backup: longhorn.io/v1beta2, postgresql.cnpg.io/v1 and velero.io/v1. The bare short name resolves to Longhorn's, which holds zero objects — so kubectl get backup -A prints "No resources found" on a cluster holding 6 Velero backups and 27 CNPG backups. Verified on prod 2026-09-13. Reading that as "the backups are gone" and acting on it turns a false negative into real data loss. Write backups.velero.io, backups.postgresql.cnpg.io, clusters.postgresql.cnpg.io, settings.longhorn.io, volumes.longhorn.io, nodes.longhorn.io.

Mutating kubectl (apply, patch, annotate, rollout) and flux reconcile are blocked for agents here: every durable change goes through git (git push origin main is the deploy). Where this runbook gives a mutating command it is for an operator, and it says so.

First commands

Which filesystem, on which node:

ssh k3s-prod-1 'df -h -x tmpfs -x overlay; echo; du -xh --max-depth=1 /data 2>/dev/null | sort -h | tail -10; echo; du -xh --max-depth=1 / 2>/dev/null | sort -h | tail -10'

What Longhorn thinks it has:

infra/devcontainer/dev.sh run bash -c \
  'kubectl --context k3s-prod -n longhorn-system get nodes.longhorn.io -o custom-columns=NAME:.metadata.name,READY:.status.conditions[?\(@.type==\"Ready\"\)].status,SCHED:.spec.allowScheduling; echo; \
   kubectl --context k3s-prod -n longhorn-system get volumes.longhorn.io -o custom-columns=NAME:.metadata.name,SIZE:.spec.size,ACTUAL:.status.actualSize,ROBUST:.status.robustness'

Journal and image bloat on /:

ssh k3s-prod-1 'sudo journalctl --disk-usage; sudo crictl images | wc -l; sudo du -sh /var/lib/rancher/k3s/agent/containerd 2>/dev/null'

Likely causes, most likely first

1. Longhorn replicas grew, or replicas landed here after a rebuild

Hard node anti-affinity (replicaSoftAntiAffinity: false) means one replica per node per volume, but replicaAutoBalance: best-effort moves them. Prod sits around 269 GiB scheduled against an 829 GiB ceiling, so this is rarely tight — but a rebuild storm plus snapshots can spike it. Remediation: check for orphaned replicas and stale snapshots in the Longhorn UI. Note orphanAutoDeletion: true in platform/longhorn/helmrelease.yaml has been silently inert since Longhorn 1.12 — it was renamed orphanResourceAutoDeletion (a list) and the chart drops unknown defaultSettings keys with no error. So orphan cleanup is manual. Verify the key's current state in the file before you trust it.

2. A CNPG database is not recycling WAL

The single most dangerous cause, because it is unbounded. With archive_mode=on and a failing archive_command, Postgres refuses to recycle unarchived WAL segments and pg_wal grows forever — on prod's keycloak-db that was measured at ~6.8 MiB/h, 17 segments / ~268 MiB, about 29 days to fill a 5 GiB PVC. pg_wal shares the data PVC (no walStorage: is configured on any Cluster). Check /runbooks/cnpg-archiving before you free any space, and never delete WAL by hand — that destroys the database.

3. Journal / container images on /

journalctl --vacuum-size=200M and pruning unused images are safe. Do not prune images for workloads that may need to restart while the registry is unreachable.

4. A Velero or CDI staging write

Velero's kopia uploads and CDI's scratch space both stage locally. longhorn-scratch (single-replica) exists precisely because the 3-replica default failed the UniFi 60Gi import on insufficient storage.

5. The disk is smaller than the platform now needs

docs/plans/longhorn-ssd-tiering.md holds the planned hot tier (~51 GB: Prometheus, CNPG, Loki, Gitea). Working set measured ~79 GB against ~323 GB free on SSD, so the "won't fit" blocker was a measurement artifact. This is operator planning work, not an incident fix.

When to escalate or stop

  • If the mountpoint is /data and free space is under 5%, treat it as an imminent control-plane outage and get the operator. etcd and Longhorn are both on it.
  • Never delete anything under /data/longhorn or a Postgres pg_wal directory by hand. Both are irreversible. Free space elsewhere, or fix the cause.
  • Do not kubectl drain the node to move load off it — this cluster does not drain.
  • If the cause is a CNPG archive failure, this runbook is the wrong one: go to /runbooks/cnpg-archiving, which is the actual fix.

Source of truth: runbooks/node-disk.md. Index: /runbooks/ Records: DECISIONS-LOG.md "Disk/drive incident + k3s relocated to NVMe (2026-08-22)"; platform/cnpg/alerts.yaml header (the WAL disk-full clock).