Files
home-network-k3s-impl/platform/monitoring
jakman85andClaude Opus 5 6a8953e288 feat(prod): observability for the two failure modes that went unseen, plus OIDC self-healing
Minimal prod delivery, authored directly on main (= prod's live revision d1a6628)
rather than by merging work/prod-standup-campaign. That branch carries the DNS apex
inversion, which would have set prod's BASE_DOMAIN to home.keithjackson.dev; prod
runs external-dns with policy: sync and txtOwnerId: prod, so it would have begun
rewriting apex records dev owns while the non-k3s prod still serves 443 there.
Operator sequencing is "dev migrates first". Nothing under clusters/ is touched
here at all, which is what makes this safe to land now.

Also deliberately EXCLUDED, because prod's live cluster-vars has no CNPG_BACKUP_PATH
key and StrictPostBuildSubstitutions would fail the whole tier: the R2 rework of
platform/velero/ and the CNPG destinationPath changes. Those land as
feat/r2-backup-prod together with the endpoint and bucket knobs.

WHAT THIS FIXES

1. Nothing was watching CNPG. All three prod databases have run since bootstrap with
   ContinuousArchiving=False and firstRecoverabilityPoint=null, and no alert existed
   anywhere. Because archive_mode=on and the archive command fails, Postgres refuses
   to recycle WAL: keycloak-db holds every segment ever written (257 MiB on a 5 GiB
   volume, ~6.8 MiB/h) — roughly 29 days to a disk-full PANIC on the cluster's SSO
   database. Found by hand, 38h late. CNPGWALArchiveBacklog would have fired within
   the hour, and evaluates to 3 firing series on prod today.
   Rules key on cnpg_collector_* rather than cnpg_pg_stat_archiver_*, because
   nextcloud-db's exporter cannot log in to its own database (permission denied for
   database "nextcloud", both clusters) so the pg_stat_archiver family does not exist
   for it — the obvious metric would have been blind to one database in three.

2. No PVC outside namespace=monitoring had any fill alert. New rules are partitioned
   by namespace so they cannot double-fire with MonitoringVolumeFillingUp, pinned to
   job="kubelet" (the apiserver copy of the same series reports namespace=default),
   and guarded by inodes > 0 — block-mode PVCs such as unifi-rootdisk report
   available=0 forever and would otherwise have fired critical permanently.

3. VPNTunnelDown could never clear on a cluster with no gateway node; it has been
   firing critical on prod since 2026-09-05. Now guarded so prod self-arms the moment
   a node carries the egress-gateway label, with dev's behaviour unchanged today.

4. The Keycloak realm import fails OPEN: an unresolved placeholder is stored
   LITERALLY and the import still reports success, then sits at Done=True and never
   re-runs. On 2026-09-06 all 12 prod OIDC clients held the literal
   $(env:..._CLIENT_SECRET) string and every SSO login failed, while every signal was
   green. The CronJob is the level-triggered correction; two alerts make its silence
   observable. Repaired live already — this stops it recurring.

Also: the R-NET-04 conformance scan descended into nested agent worktrees under
.claude/, counting 4 egress policies where 1 is authored.

Co-Authored-By: Claude Opus 5 <[email protected]>
2026-09-07 00:59:22 -05:00
..
2026-08-24 19:52:25 -05:00

platform/monitoring

Observability stack — kube-prometheus-stack (Prometheus + Alertmanager + Grafana) + Loki + Grafana Alloy + platform-health PrometheusRules.

Contents

File What
namespace.yaml monitoring namespace
helmrepositories.yaml prometheus-community + grafana Flux HelmRepositorys
kube-prometheus-stack.yaml HelmRelease — Prometheus, Alertmanager (→ SMTP email), Grafana, kube-state-metrics, node-exporter
loki.yaml HelmRelease — Loki single-binary, filesystem, compactor-enforced retention
alloy.yaml HelmRelease — Grafana Alloy DaemonSet, tails pod logs → Loki
alerts.yaml Platform-health PrometheusRules (R-OBS-04)
kustomization.yaml builds all of the above

Requirement mapping

  • R-OBS-01 (what is monitored): Prometheus + node-exporter + kube-state-metrics for metrics; Alloy → Loki for logs. serviceMonitorSelectorNilUsesHelmValues: false so ServiceMonitors from every namespace (and those rendered from ServiceDefinitions, docs/13) are scraped by default.
  • R-OBS-02 (alert delivery): Alertmanager routes by severity (critical vs warning) to email. SMTP creds are a SOPS secret referenced by name only (see below).
  • R-OBS-03 (dashboards): Grafana, with the dashboard/datasource sidecar watching grafana_dashboard-labeled ConfigMaps across all namespaces (per-service dashboards land here). Grafana is part of the C2 UI composition (docs/12), later behind Keycloak SSO (ADR-0014).
  • R-OBS-04 (platform health): alerts.yaml — first-class alerts for nodes, Longhorn, Flux, cert-manager, networking/VPN/Hubble, Velero backups, Keycloak/IdP, and the monitor's own capacity. Split critical/warning per the docs/10 severity model.

SMTP secret (operator hand-off)

Alertmanager reads the SMTP password from a mounted SOPS-encrypted Secret — referenced by name, never inlined. The operator must provide (out of band, SOPS-encrypted per docs/07):

kind: Secret
metadata:
  name: alertmanager-smtp        # <-- referenced in kube-prometheus-stack.yaml (alertmanagerSpec.secrets)
  namespace: monitoring
stringData:
  smtp-password: "<app password>"   # mounted at /etc/alertmanager/secrets/alertmanager-smtp/smtp-password

The non-secret SMTP fields (smtp_smarthost, smtp_from, smtp_auth_username, and the receiver to: address) are REPLACE-ME placeholders in kube-prometheus-stack.yaml for the operator to fill (same convention as velero/). Grafana's admin bootstrap likewise references a SOPS secret by name — grafana-admin-credentials (keys admin-user / admin-password).

Dev trims (the ~22 GiB RAM ceiling)

This subtree is authored to stay light on the single dev workstation:

  • Loki chunksCache/resultsCache DISABLED — the grafana/loki chart's default memcached caches request ~8-9 GiB each; leaving them on would blow the budget by itself. Also disabled: the nginx gateway, lokiCanary, and test hooks. Loki runs SingleBinary (one pod).
  • Single replicas everywhere (Prometheus, Alertmanager, Grafana, Loki).
  • Modest requests/limits on every component (see values). Ephemeral (emptyDir) state for Alertmanager and Grafana in dev.
  • k3s control-plane scrape jobs disabled (kubeControllerManager/kubeScheduler/kubeEtcd/ kubeProxy) — embedded in k3s, not separately scrapable; keeps targets green and RAM down.

Approximate steady-state memory requests (what the scheduler reserves):

Component Req Notes
Prometheus 384Mi limit 1Gi
Alertmanager 32Mi
Grafana 128Mi
prometheus-operator 96Mi
kube-state-metrics 64Mi
node-exporter ×3 96Mi 32Mi/node DaemonSet
Loki (single binary) 192Mi limit 512Mi
Alloy ×3 288Mi 96Mi/node DaemonSet
Total requests ~1.3 GiB working set typically ~1.5-2.5 GiB; limit ceiling ~3 GiB

Comfortably within the 22 GiB box alongside the rest of the platform.

Environment knobs (R-ENV-02)

Only three substitution vars touch this subtree; the dev overlay (clusters/dev) patches cluster-vars to dev values:

Var base dev
${MONITORING_PROMETHEUS_RETENTION} 7d 3d
${MONITORING_PROMETHEUS_PVC_SIZE} 10Gi 8Gi
${MONITORING_PROMETHEUS_RETENTION_SIZE} 8GiB 5GiB
${MONITORING_LOKI_PVC_SIZE} 10Gi 5Gi

MONITORING_PROMETHEUS_RETENTION_SIZE is a size-based retention cap (Prometheus *iB units, distinct from the K8s Gi PVC knob) and must stay below MONITORING_PROMETHEUS_PVC_SIZE. Time-only retention prunes nothing until the age window elapses, so a young/busy cluster fills /prometheus first; a full disk wedges every WAL commit (scrapes still 200 but samples are dropped, the head freezes) and makes every absent()/==0 platform alert fire falsely. The size cap drops the oldest blocks before the disk fills. (prod overlay: PVC 50Gi, cap 45GiB.)

PVCs use the replicated longhorn StorageClass (ADR-0003).

Notes / known gaps for bring-up

  • Loki log retention has no dedicated knob. Only the three vars above exist. Loki's retention_period is hardcoded to 72h (compactor-enforced) to mirror dev metrics retention. Promote to a cluster-vars knob (in clusters/, out of this subtree) if per-env log retention is wanted.
  • Several R-OBS-04 rules depend on exporters/ServiceMonitors owned by other workstreams (Flux, cert-manager, Longhorn, Velero, Keycloak, Cilium/Hubble). Rules are authored to fire once those series arrive; metric names marked TODO(WS-*) in alerts.yaml (notably the egress VPN metric) need confirming against the deployed exporter.
  • Hubble network-flow visibility itself is delivered by platform/cilium (docs/03); this subtree only consumes its metrics for denied-flow alerts.

Validate (no deploy)

kubectl kustomize platform/monitoring

Author-only — nothing here is applied to a cluster; Flux reconciles it at deploy time.